Bioinformatics with Bash/Python

Bioinformatics with Bash/Python (10 sessions)

These sessions cover an introduction to programming in bash and Python, biological sequence analysis and best practices of data organization.

Python course material

Video part 1/10: Linux basic commands (ls, echo, pwd, tree, find, ncdu, history, cd) HR Download or Streaming (ANU sign-in)

Video part 2/10: Linux basic commands (mkdir, less, head, less) HR Download or Streaming (ANU sign-in)

Video part 3/10: Variable, for loop, bash script HR Download or Streaming (ANU sign-in)

Video part 4/10: Bash script, bwa HR Download or Streaming (ANU sign-in)

Video part 5/10: Jupyter notebook, anaconda, python introduction (expressions and values) HR Download or Streaming (ANU sign-in)

Video part 6/10: Loops and control statements HR Download or Streaming (ANU sign-in)

Video part 7/10: Data structures (lists, sets, and dictionaries) HR Download or Streaming (ANU sign-in)

Video part 8/10: Biopython and exercises HR Download or Streaming (ANU sign-in)

Video part 9/10: Pandas, matplotlib HR Download or Streaming (ANU sign-in)

Video part 10/10: Pandas and exercises HR Download or Streaming (ANU sign-in)